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1Department of Preventive Medicine, Dong-A University School of Medicine, Busan, Korea.
2Department of Psychiatry, Dong-A University School of Medicine, Busan, Korea.
3Department of Environmental Health, Korea Open University, Seoul, Korea.
© 2010, Korean Society of Epidemiology
This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
The authors have no conflict of interest to declare on this study.
This article is available from: http://e-epih.org/.
Genes | SNPs | Primers | Sequences (5'→3') | Annealing temp (c ) |
---|---|---|---|---|
COMT | rs4680 (Val158Met) | Forward | ATCAACCCCGACTGTGCC | 55 |
Reverse | CTTTTTCCAGGTCTGACAACG | |||
Extension | 5'FAM -GCGGATGGTGGATTTCGCTGGC | |||
rs165599 (3'-fianking region) | Forward | TCCTGCAGCTAGGCCAGG | 55 | |
Reverse | AGAAAGGTGTGAATGCTGG | |||
Extension | 5'FAM -GCTGACTCCTCTTCGTTTCCCAGGC | |||
MTHFR | rs1801133 (C677T) | Forward | AAGCAGGGAGCTTTGAGGC | 55 |
Reverse | CAAGTGATGCCCATGTCG | |||
Extension | 5'FAM -GAAAAGCTGCGTGATGATGAAATCG | |||
rs1801131 (A1298C) | Forward | AAGGAGGAGCTGCTGAAGA | 55 | |
Reverse | TTTGTGACCATTCCGGTT | |||
Extension | 5'FAM -TAAAGAACAAAGACTTCAAAGACACTT |
Genes | SNPs | Genotype | N (%) |
OR | 95% CI | p-value | ||||
---|---|---|---|---|---|---|---|---|---|---|
Controls (n=348) |
Patients (n=360) |
|||||||||
n | % | n | % | |||||||
COMT | rs4680 | GG | 192 | 55.2 | 194 | 53.9 | 1.00* | - | - | - |
GA | 132 | 37.9 | 139 | 38.6 | 1.04 | 0.76 | 1.42 | 0.79 | ||
AA | 24 | 6.9 | 27 | 7.5 | 1.11 | 0.62 | 2.00 | 0.72 | ||
rs165599 | GG | 76 | 21.8 | 66 | 18.3 | 1.00* | - | - | - | |
GA | 160 | 46.0 | 184 | 51.1 | 1.32 | 0.89 | 1.96 | 0.16 | ||
AA | 112 | 32.2 | 110 | 30.6 | 1.13 | 0.74 | 1.72 | 0.57 | ||
MTHFR | rs1801133 | CC | 130 | 37.4 | 125 | 34.7 | 1.00* | - | - | - |
CT | 158 | 45.4 | 176 | 48.9 | 1.16 | 0.84 | 1.61 | 0.38 | ||
TT | 60 | 17.2 | 59 | 16.4 | 1.02 | 0.66 | 1.60 | 0.92 | ||
rs1801131 | AA | 239 | 68.7 | 248 | 68.9 | 1.00* | - | - | - | |
CA | 100 | 28.7 | 105 | 29.2 | 1.01 | 0.73 | 1.40 | 0.94 | ||
CC | 9 | 2.6 | 7 | 1.9 | 0.75 | 0.28 | 2.05 | 0.57 |
Genes | SNPs | Sex | Genotype | N (%) |
OR | 95% CI | p-vaiue | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
Controls (n=348) |
Patients (n=360) |
||||||||||
n | % | n | % | ||||||||
COMT | rs4680 | Male | GG | 114 | 58.2 | 105 | 53.8 | 1.00* | - | - | - |
GA | 66 | 33.7 | 75 | 38.5 | 1.23 | 0.81 | 1.86 | 0.33 | |||
AA | 16 | 8.2 | 15 | 7.7 | 1.02 | 0.49 | 2.16 | 0.96 | |||
rs165599 | GG | 40 | 20.4 | 35 | 17.9 | 1.00* | - | - | - | ||
GA | 86 | 43.9 | 107 | 54.9 | 1.42 | 0.83 | 2.43 | 0.18 | |||
AA | 70 | 35.7 | 53 | 27.2 | 0.87 | 0.49 | 1.54 | 0.62 | |||
MTHFR | rs1801133 | CC | 79 | 40.3 | 71 | 36.4 | 1.00* | - | - | - | |
CT | 81 | 41.3 | 88 | 45.1 | 1.21 | 0.78 | 1.88 | 0.40 | |||
TT | 36 | 18.4 | 36 | 18.5 | 1.11 | 0.63 | 1.95 | 0.71 | |||
rs1801131 | AA | 134 | 68.4 | 140 | 71.8 | 1.00* | - | - | - | ||
CA | 58 | 29.6 | 51 | 26.2 | 0.84 | 0.54 | 1.31 | 0.45 | |||
CC | 4 | 2.0 | 4 | 2.1 | 0.96 | 0.24 | 3.91 | 0.95 | |||
COMT | rs4680 | Female | GG | 78 | 51.3 | 89 | 54.3 | 1.00* | - | - | - |
GA | 66 | 43.4 | 63 | 38.4 | 0.84 | 0.53 | 1.33 | 0.45 | |||
AA | 8 | 5.3 | 12 | 7.3 | 1.32 | 0.51 | 3.38 | 0.57 | |||
rs165599 | GG | 36 | 23.7 | 30 | 18.3 | 1.00* | - | - | - | ||
GA | 74 | 48.7 | 77 | 47.0 | 1.25 | 0.70 | 2.23 | 0.45 | |||
AA | 42 | 27.6 | 57 | 34.8 | 1.63 | 0.88 | 3.05 | 0.13 | |||
MTHFR | rs1801133 | CC | 51 | 33.6 | 54 | 32.9 | 1.00* | - | - | - | |
CT | 77 | 50.7 | 87 | 53.0 | 1.07 | 0.65 | 1.74 | 0.80 | |||
TT | 24 | 15.8 | 23 | 14.0 | 0.91 | 0.46 | 1.80 | 0.78 | |||
rs1801131 | AA | 105 | 69.1 | 107 | 65.2 | 1.00* | - | - | - | ||
CA | 42 | 27.6 | 54 | 32.9 | 1.26 | 0.78 | 2.05 | 0.35 | |||
CC | 5 | 3.3 | 3 | 1.8 | 0.59 | 0.14 | 2.53 | 0.48 |
Genes | Genotype | N (%) |
OR | 95% CI | p-vaiue | |||||
---|---|---|---|---|---|---|---|---|---|---|
Controis (n=348) | Patients (n=360) | |||||||||
COMT | rs4680 | rs165599 | n | % | n | % | ||||
Vai | GG | 65 | 33.9 | 57 | 29.4 | 1.00* | - | - | - | |
GA | 85 | 44.3 | 100 | 51.5 | 1.34 | 0.85 | 2.12 | 0.20 | ||
AA | 42 | 21.9 | 37 | 19.1 | 1.01 | 0.57 | 1.77 | 0.99 | ||
Met carrier | GG | 11 | 7.1 | 9 | 5.4 | 1.00* | - | - | - | |
GA | 75 | 48.1 | 84 | 50.6 | 1.37 | 0.54 | 3.48 | 0.51 | ||
AA | 70 | 44.9 | 73 | 44.0 | 1.27 | 0.50 | 3.26 | 0.61 | ||
MTHFR | rs1801133 | rs1801131 | n | % | n | % | ||||
CC | AA | 72 | 55.4 | 63 | 50.4 | 1.00* | - | - | - | |
CA | 50 | 38.5 | 55 | 44.0 | 1.26 | 0.75 | 2.10 | 0.38 | ||
CC | 8 | 6.2 | 7 | 5.6 | 1.00 | 0.34 | 2.91 | 1.00 | ||
CT+TT | AA | 167 | 76.6 | 185 | 78.7 | 1.00* | - | - | - | |
CA | 50 | 22.9 | 50 | 21.3 | 0.90 | 0.58 | 1.41 | 0.65 | ||
CC | 1 | 0.5 | 0 | 0 | - | - | - | - |
Genes | MTHFRrs1801133 | N (%) |
OR | 95% CI | p-vaiue | |||||
---|---|---|---|---|---|---|---|---|---|---|
Controis (n=348) |
Patients (n=360) |
|||||||||
n | % | n | % | |||||||
COMT | Vai | CC | 69 | 35.9 | 62 | 32.0 | 1.00* | - | - | - |
rs4680 | CT | 97 | 50.5 | 100 | 51.5 | 1.15 | 0.74 | 1.79 | 0.54 | |
TT | 26 | 13.5 | 32 | 16.5 | 1.37 | 0.74 | 2.55 | 0.32 | ||
Met carrier | CC | 61 | 39.1 | 63 | 38.0 | 1.00* | - | - | - | |
CT | 61 | 39.1 | 76 | 45.8 | 1.21 | 0.74 | 1.96 | 0.45 | ||
TT | 34 | 21.8 | 27 | 16.3 | 0.77 | 0.42 | 1.42 | 0.40 |
COMT, catechol-O-methyltransferase; MTHFR, methylenetetrahydrofolate reductase.
OR, odds ratio; CI, confidence interval; COMT, catechol-O-methyltransferase; MTHFR, methylenetetrahydrofolate reductase. *Reference category, OR=1.
OR, odds ratio; CI, confidence interval; COMT, catechol-O-methyltransferase; MTHFR, methylenetetrahydrofolate reductase. *Reference category, OR=1.
OR, odds ratio; CI, confidence interval; COMT, catechol-O-methyltransferase; MTHFR, methylenetetrahydrofolate reductase. *Reference category, OR=1, Val genotype; GG, Met carrier genotype; GA+AA.
OR, odds ratio; CI, confidence interval; COMT, catechol-O-methyltransferase; MTHFR, methylenetetrahydrofolate reductase. *Reference category, OR=1, Val genotype; GG, Met carrier genotype; GA+AA.