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Network meta-analysis: application and practice using R software
Sung Ryul Shim, Seong-Jang Kim, Jonghoo Lee, Gerta Rücker
Epidemiol Health. 2019;41:e2019013.   Published online April 8, 2019
DOI: https://doi.org/10.4178/epih.e2019013
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AbstractAbstract AbstractSummary PDFSupplementary Material
Abstract
The objective of this study is to describe the general approaches to network meta-analysis that are available for quantitative data synthesis using R software. We conducted a network meta-analysis using two approaches: Bayesian and frequentist methods. The corresponding R packages were “gemtc” for the Bayesian approach and “netmeta” for the frequentist approach. In estimating a network meta-analysis model using a Bayesian framework, the “rjags” package is a common tool. “rjags” implements Markov chain Monte Carlo simulation with a graphical output. The estimated overall effect sizes, test for heterogeneity, moderator effects, and publication bias were reported using R software. The authors focus on two flexible models, Bayesian and frequentist, to determine overall effect sizes in network meta-analysis. This study focused on the practical methods of network meta-analysis rather than theoretical concepts, making the material easy to understand for Korean researchers who did not major in statistics. The authors hope that this study will help many Korean researchers to perform network meta-analyses and conduct related research more easily with R software.
Summary
Korean summary
통계프로그램으로서의 R이 대세인 연구환경에서 R을 활용한 체계적인 메타분석 안내서가 요구되어지며 본 연구는 이에 대한 좋은 해답이 될 것이다. 더욱이 본 연구는 네트워크 메타분석 (Network meta-analysis)의 이론과 더불어 R을 활용한 실습위주의 내용으로 구성되어져 있어 누구나 쉽게 실행할 수 있을 것이다. 본 연구를 통하여 많은 연구자들이 보다 쉽게 본인의 연구분야에 적용하여 관련 연구가 활성화되기를 바란다.

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Intervention meta-analysis: application and practice using R software
Sung Ryul Shim, Seong-Jang Kim
Epidemiol Health. 2019;41:e2019008.   Published online March 28, 2019
DOI: https://doi.org/10.4178/epih.e2019008
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AbstractAbstract AbstractSummary PDFSupplementary Material
Abstract
The objective of this study was to describe general approaches for intervention meta-analysis available for quantitative data synthesis using the R software. We conducted an intervention meta-analysis using two types of data, continuous and binary, characterized by mean difference and odds ratio, respectively. The package commands for the R software were “metacont”, “metabin”, and “metagen” for the overall effect size, “forest” for forest plot, “metareg” for meta-regression analysis, and “funnel” and “metabias” for the publication bias. The estimated overall effect sizes, test for heterogeneity and moderator effect, and the publication bias were reported using the R software. In particular, the authors indicated methods for calculating the effect sizes of the target studies in intervention meta-analysis. This study focused on the practical methods of intervention meta-analysis, rather than the theoretical concepts, for researchers with no major in statistics. Through this study, the authors hope that many researchers will use the R software to more readily perform the intervention meta-analysis and that this will in turn generate further related research.
Summary
Korean summary
통계프로그램으로서의 R이 대세인 연구환경에서 R을 활용한 체계적인 메타분석 안내서가 요구되어지며 본 연구는 이에 대한 좋은 해답이 될 것이다. 더욱이 본 연구는 메타분석 (Intervention meta-analysis)의 이론과 더불어 R을 활용한 실습위주의 내용으로 구성되어져 있어 누구나 쉽게 실행할 수 있을 것이다. 본 연구를 통하여 많은 연구자들이 보다 쉽게 본인의 연구분야에 적용하여 관련 연구가 활성화되기를 바란다.

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    GeunTae Kim, Sung Ryul Shim, Youngseob Seo, Hokeun Sun, Suraiya Saleem
    International Journal of Clinical Practice.2026;[Epub]     CrossRef
  • Effects of exercise intensity and volume on systemic inflammation in overweight and obese postmenopausal women: a dose-response meta-analysis
    Gang Huang, Guanbo Wang, Lianghao Zhu, Ping Wang
    Frontiers in Immunology.2026;[Epub]     CrossRef
  • Determinants and Health Outcomes of Digital Health Literacy in Patients With Cardiovascular Disease: Systematic Review and Meta-Analysis
    Eun-Jung Kim, Da-Young Kim, Ha-Jin Kim, Youn-Jung Son
    Journal of Medical Internet Research.2026; 28: e89102.     CrossRef
  • The potential association between baseline cortisol levels and type 2 diabetes in Tunisian Women? a case-control study and meta-analysis across blood, saliva, and urine
    Chiraz Zayani, Imen Kallel, Rania Abdelhedi, Mouna Mnif Feki, Faiza Fakhfakh
    Euro-Mediterranean Journal for Environmental Integration.2026;[Epub]     CrossRef
  • Calculating and extracting missing summary statistics for meta-analysis
    Jieun Shin, Taeho Greg Rhee, Seong-Jang Kim, Sung Ryul Shim
    Journal of Evidence-Based Practice.2026; 2(1): 1.     CrossRef
  • Clinical effects of ursodeoxycholic acid in COVID-19 infection: a systematic review and dose–response meta-analysis
    Joo Hye Song, Sung Ryul Shim, Jieun Shin, Won Hyeok Choe, Jiho Park, Tae Hee Lee, Seonghui Kang, Taeho Greg Rhee, Kyu Chan Huh
    Frontiers in Pharmacology.2026;[Epub]     CrossRef
  • Adjunctive Antipsychotics in Major Depressive Disorder
    Roger S. McIntyre, Stephen M. Stahl, Sung Ryul Shim, Maurizio Pompili, Joseph F. Goldberg, Christoph U. Correll, Angela T. H. Kwan, Christine E. Dri, Heidi Xu, Maj Vinberg, Taeho Greg Rhee
    JAMA Psychiatry.2026; 83(7): 741.     CrossRef
  • Ketamine Infusions and Rapid Reduction of Suicidal and Depressive Symptoms in Major Depressive Episode
    Sung Ryul Shim, Hye Su Jeong, Tanner J. Bommersbach, Andrew A. Nierenberg, Carlos A. Zarate, Tyler S. Kaster, Christoph U. Correll, Roger S. McIntyre, John H. Krystal, Taeho Greg Rhee
    JAMA Psychiatry.2026; 83(7): 714.     CrossRef
  • A Meta Analysis of Randomised Controlled Trials on Psychological Interventions for PTSD and Depression in Adolescent Victims of Sexual Abuse
    Shreya Kulshreshtha, Sujata Satapathy, Rajesh Sagar, Renu Sharma, Reeta Mahey
    Clinical Child Psychology and Psychiatry.2026;[Epub]     CrossRef
  • Quantifying Weight Loss Prior to Pancreatic Cancer Diagnosis: A Systematic Review and Meta‐Analysis
    Claire A. Price, Debbie Cooke, Freda Mold, Nadia A. S. Smith, Martyn Winn, Agnieszka Lemanska
    Cancer Medicine.2026;[Epub]     CrossRef
  • Proficiency‐based training and evidence‐based methodology: a systematic review and meta‐analysis
    Ruben De Groote, Edoardo Beatrici, Maria Peraire Lores, Stefano Puliatti, Marco Amato, Elio Mazzone, Rui Farinha, Artur Paludo, Claudia Collà Ruvolo, Eleonora Balestrazzi, Luigi Nocera, Carlo Andrea Bravi, Federico Piramide, Marco Paciotti, Adele Piro, Si
    BJU International.2026;[Epub]     CrossRef
  • The Effectiveness of Technology Integration in Secondary Mathematics: A Meta-analysis from an Activity Theory Perspective
    Yimei Zhang, Jie Gao, Xiaoshan Huang, Shasha Li, Mengqian Wu, Yiran Lin, Nikki G. Lobczowski
    Canadian Journal of Science, Mathematics and Technology Education.2026;[Epub]     CrossRef
  • Efficacy and Safety of the C3 Inhibitor Pegcetacoplan in Paroxysmal Nocturnal Hemoglobinuria: A Systematic Review and Meta‐Analysis
    Kleuber Arias Meireles Martins, Mariana Menezes Corcinio, Bruno Arias Meireles Martins, Giovana Menegucci, Isabela Coutinho Faria
    European Journal of Haematology.2026;[Epub]     CrossRef
  • TMS and tDCS as potential tools for the treatment of cognitive deficits in Parkinson’s disease: a meta-analysis
    Andreina Giustiniani, Lorenza Maistrello, Valentina Mologni, Laura Danesin, Francesca Burgio
    Neurological Sciences.2025; 46(2): 579.     CrossRef
  • Skeletal muscle relaxant for the treatment of fibromyalgia: a systematic review and meta-analysis of randomized controlled trials
    Chung Hin Shing, Fengfeng Wang, Lai Ning Lydia Lau, Pui Ming Lam, Hung Chak Ho, Stanley Sau Ching Wong
    Regional Anesthesia & Pain Medicine.2025; 50(12): 937.     CrossRef
  • Efficient catalytic regeneration of amine-based solvents in CO2 capture: A comprehensive meta-analysis
    Muhammad Imran-Shaukat, Hossein Haghani, Rattanaporn Apaiyakul, Hongxia Gao, Zhiwu Liang, Paitoon Tontiwachwuthikul, Teerawat Sema
    Separation and Purification Technology.2025; 359: 130434.     CrossRef
  • Incidence of Venous Thromboembolism in Asian Patients With Inflammatory Bowel Disease: A Systematic Review and Meta‐Analysis
    Joo Hye Song, Sung Ryul Shim, Dae Sung Kim, Hoon Sup Koo, Kyu Chan Huh
    Journal of Gastroenterology and Hepatology.2025; 40(4): 774.     CrossRef
  • Prostate Cancer and Suicide Risk: A Systematic Review and Meta-Analysis
    Yun Jin Kim, Eun Ji Lee, Sung Ryul Shim, Jae Heon Kim
    The World Journal of Men's Health.2025; 43(4): 853.     CrossRef
  • Reduction of Bleeding From Pterygopalatal Injection
    Sung Ryul Shim, Jieun Shin, Cheol Mog Hwang, Yong Kyun Kim, Jong Bum Park, Jong-Yeup Kim
    JAMA Otolaryngology–Head & Neck Surgery.2025; 151(4): 389.     CrossRef
  • The Influence of Noise Exposure on Cognitive Function in Children and Adolescents: A Meta-Analysis
    David Fernández-Quezada, Diana Emilia Martínez-Fernández, Ileana Fuentes, Joaquín García-Estrada, Sonia Luquin
    NeuroSci.2025; 6(1): 22.     CrossRef
  • The Role of Parenting Styles in Narcissism Development: A Systematic Review and Meta-Analysis
    Ariana dos dos Reis, João Paulo Martins, Rui Santos
    AppliedMath.2025; 5(1): 23.     CrossRef
  • Application of oral nutritional supplements to control body weight loss in postoperative patients suffering from solid tumors: a systematic review and meta-analysis
    Ying Liu, Zhen Wu, Tingting Shao, Wanzhen Zheng, Jing Huang
    Frontiers in Nutrition.2025;[Epub]     CrossRef
  • Comparative efficacy of traditional non-pharmacological add-on treatments in patients with stable chronic obstructive pulmonary disease: a systematic review and network meta-analysis
    Ji-Ae Roh, Jungtae Leem, Beom-Joon Lee, Kwan-Il Kim, Hee-Jae Jung
    Frontiers in Public Health.2025;[Epub]     CrossRef
  • Pentosan Polysulfate Sodium and Maculopathy in Patients with Interstitial Cystitis: A Systematic Review and Meta-Analysis
    Jongsoo Lee, Yun Jin Kim, Konghee Lee, Young Kook Kim, Taeho Greg Rhee, Sung Ryul Shim, Jae Heon Kim
    The World Journal of Men's Health.2025; 43(4): 866.     CrossRef
  • Comparative efficacy of mind–body exercise for pain, function, quality of life in knee osteoarthritis: a systematic review and network meta-analysis
    Kaixia Gao, Jinmeng Tao, Guangyuan Liang, Chen Gong, Lin Wang, Yuling Wang
    Journal of Orthopaedic Surgery and Research.2025;[Epub]     CrossRef
  • Preservation Rhinoplasty Versus Structural Rhinoplasty in Dorsal Hump Reduction: A Systematic Review and Meta-Analysis of Randomized Controlled Studies
    Sung Ryul Shim, Jong-Yeup Kim, Seon-Min Lee, Ki-Il Lee
    Facial Plastic Surgery & Aesthetic Medicine.2025; 27(6): 564.     CrossRef
  • Effect of tranexamic acid in spine surgeries: a systematic review and network meta-analysis
    Sung Ryul Shim, Sangah Han, Ji Hun Jeong, Inhwan Hwang, Yonghan Cha, Chunhwa Ihm
    Frontiers in Surgery.2025;[Epub]     CrossRef
  • The clinical efficacy of percutaneous endoscopic lumbar discectomy combined with platelet-rich plasma injection for lumbar disc herniation: a systematic review and meta-analysis
    Hua Song, Ying Zhang
    Frontiers in Surgery.2025;[Epub]     CrossRef
  • Evaluating the Impact of Induction and Consolidation Total Neoadjuvant Therapies Compared to Conventional Chemoradiotherapy for Locally Advanced Rectal Cancer: A Systematic Review and Network Meta-analysis
    Chinock Cheong, Na Won Kim, Sung Ryul Shim, Jeonghyun Kang
    Diseases of the Colon & Rectum.2025; 68(6): 687.     CrossRef
  • Platelet-Rich Plasma for Treating Chronic Noncancer Pain: A Systematic Review and Meta-analysis of Randomized Controlled Trials
    Fengfeng Wang, Fei Meng, Timmy Chi Wing Chan, Stanley Sau Ching Wong
    Pain and Therapy.2025; 14(4): 1169.     CrossRef
  • Comparing the Performance of Machine Learning Models and Conventional Risk Scores for Predicting Major Adverse Cardiovascular Cerebrovascular Events After Percutaneous Coronary Intervention in Patients With Acute Myocardial Infarction: Systematic Review a
    Min-Young Yu, Hae Young Yoo, Ga In Han, Eun-Jung Kim, Youn-Jung Son
    Journal of Medical Internet Research.2025; 27: e76215.     CrossRef
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    Rania Marie Buenavista, Snehasis Chakraborty, Kaliramesh Siliveru
    Sustainable Food Proteins.2025;[Epub]     CrossRef
  • Effects of different exercise modalities on balance performance in healthy older adults: a systematic review and network meta-analysis of randomized controlled trials
    Shikun Zhang, Guoping Qian, Hong Xu, Meiling Gu, Sujie Mao, Yan’an Wang, Yuqing Zhang, Wensheng Zhou
    BMC Geriatrics.2025;[Epub]     CrossRef
  • Couples’ therapies can improve clinical outcomes of patients with post-traumatic stress disorder: meta-analysis of eighteen clinical studies
    Yu-Ting Tao, Jin Xie, Hua-Ling Jiang, Teng-Yu Gao, Xin Liu, Chao Zhang, Ling Yang
    BMC Psychology.2025;[Epub]     CrossRef
  • Coronary microvascular dysfunction in post-PCI target vessels: a systematic review and meta-analysis of prevalence and associated outcomes
    Yunze Li, Jinlan Duan, Hongxu Liu, Sheng Lin, Hongkun Xu, Xiang Li
    Frontiers in Cardiovascular Medicine.2025;[Epub]     CrossRef
  • Associations of oseltamivir with neuropsychiatric and behavioral adverse events: A systematic review and meta-analysis
    Hye Su Jeong, Yeo Wool Lee, Taeho Greg Rhee, Sung Ryul Shim
    Journal of Managed Care & Specialty Pharmacy.2025; 31(10): 1051.     CrossRef
  • Effect of cabergoline on the management of diabetes mellitus: a systematic review and meta-analysis
    Shahrazad Khorasani, Tahereh Dara, Hamidreza Dehghan, Mohsen Zabihi, Maryam Saghafi, Fatemeh Saghafi
    Cardiovascular Diabetology – Endocrinology Reports.2025;[Epub]     CrossRef
  • Systematic Review and Meta-Analysis of Radiation Dose Reduction Studies in Pediatric Head CT
    Kevin He, Adam Boukind, Anusha S. Sanka, Joseph G. Ribaudo, Sophia Chryssofos, Gary B. Skolnick, Lauren B. Yaeger, Allan M. Thomas, Ali Y. Mian, Kamlesh B. Patel
    American Journal of Neuroradiology.2025; 46(9): 1875.     CrossRef
  • Longitudinal associations of electroconvulsive therapy with all-cause mortality and suicide deaths in severe unipolar or bipolar depression: a systematic review and meta-analysis
    Taeho Greg Rhee, Sungryul Shim, Madeeha Nasir, Roger S. McIntyre, Tyler S. Kaster, Samuel T. Wilkinson
    BMJ Mental Health.2025; 28(1): e302083.     CrossRef
  • Machine Learning for Predicting Stroke Risk Stratification using Multi-Omics Data: Systematic Review (Preprint)
    Hae Young Yoo, Hyerim Shin, Eun-Jung Kim, Youn-Jung Son
    Journal of Medical Internet Research.2025;[Epub]     CrossRef
  • Long-term efficacy of total versus posterior partial fundoplication in patients with gastro-oesophageal reflux disease: a systematic review and meta-analysis
    DV Peristeri, H Room, D Tsironis, G Vasilikostas, A Wan
    The Annals of The Royal College of Surgeons of England.2024; 106(7): 569.     CrossRef
  • Increased risk of hearing loss associated with macrolide use: a systematic review and meta-analysis
    Sung Ryul Shim, YungJin Lee, Seung Min In, Ki‐Il Lee, Ikhee Kim, Hyoyeon Jeong, Jieun Shin, Jong-Yeup Kim
    Scientific Reports.2024;[Epub]     CrossRef
  • Effects of Continuous Glucose Monitoring on Glycemic Control in Type 2 Diabetes: A Systematic Review and Meta-Analysis
    Seung-Yeon Kong, Mi-Kyoung Cho
    Healthcare.2024; 12(5): 571.     CrossRef
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    Yuan Tao, Qian Liang, Fenghong Zhang, Shaofan Guo, Lingyun Fan, Fei Zhao
    Systematic Reviews.2024;[Epub]     CrossRef
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    Stefano Tappero, Giuseppe Fallara, Francesco Chierigo, Andrea Micalef, Francesca Ambrosini, Raquel Diaz, Andrea Dorotei, Edoardo Pompeo, Alessia Limena, Carlo Andrea Bravi, Mattia Longoni, Mattia Luca Piccinelli, Francesco Barletta, Luigi Albano, Elio Maz
    European Journal of Nuclear Medicine and Molecular Imaging.2024; 51(10): 3061.     CrossRef
  • The Effect of Socioeconomic Drivers on Under-five Mortality Rates: A Survey Bayesian Meta-analysis Study
    Welcome J. Dlamini, Sileshi F. Melesse, Henry G. Mwambi
    The Open Public Health Journal.2024;[Epub]     CrossRef
  • Current updates relating to treatment for interstitial cystitis/bladder pain syndrome: systematic review and network meta-analysis
    Jae Joon Park, Kwang Taek Kim, Eun Ji Lee, Joey Chun, Serin Lee, Sung Ryul Shim, Jae Heon Kim
    BMC Urology.2024;[Epub]     CrossRef
  • Surgical Treatment for Endometrial Cancer, Hysterectomy Performed via Minimally Invasive Routes Compared with Open Surgery: A Systematic Review and Network Meta-Analysis
    Purushothaman Natarajan, Gayathri Delanerolle, Lucy Dobson, Cong Xu, Yutian Zeng, Xuan Yu, Kathleen Marston, Thuan Phan, Fiona Choi, Vanya Barzilova, Simon G. Powell, James Wyatt, Sian Taylor, Jian Qing Shi, Dharani K. Hapangama
    Cancers.2024; 16(10): 1860.     CrossRef
  • Management for degenerative lumbar spondylolisthesis: a network meta-analysis and systematic review basing on randomized controlled trials
    Hao Jia, Zhuo Zhang, Jianpu Qin, Lipei Bao, Jun Ao, Hu Qian
    International Journal of Surgery.2024; 110(5): 3050.     CrossRef
  • Effects of robot-assisted percutaneous kyphoplasty on osteoporotic vertebral compression fractures: a systematic review and meta-analysis
    Haoqian Chen, Jia Li, Xin Wang, Yanming Fu
    Journal of Robotic Surgery.2024;[Epub]     CrossRef
  • Effectiveness and safety of acupuncture modalities for overweight and obesity treatment: a systematic review and network meta-analysis of RCTs
    Youngjin Kim, Ha-im Park, Hongmin Chu, Hanbit Jin, Jungtae Leem
    Frontiers in Medicine.2024;[Epub]     CrossRef
  • Effectiveness of Reading Interventions on Literacy Skills for Chinese Children with and Without Dyslexia: a Meta-analysis of Randomized Controlled Trials
    Yijun Ruan, Urs Maurer, Catherine McBride
    Educational Psychology Review.2024;[Epub]     CrossRef
  • Association of systemic immune biomarkers with metabolic dysfunction-associated steatotic liver disease: a cross-sectional study of NHANES 2007–2018
    Yong Wang, Shude Chen, Chen Tian, Qi Wang, Zhihua Yang, Wieqi Che, Yike Li, Yang Luo
    Frontiers in Nutrition.2024;[Epub]     CrossRef
  • Efficacy of different analgesic strategies combined with conventional physiotherapy program for treating chronic shoulder pain: a systematic review and network meta-analysis
    Fangjie Yang, Xinmin Li, Jing Wang, Qian Gao, Mengyang Pan, Zhenfei Duan, Chunlin Ren, Pengxue Guo, Yasu Zhang
    Journal of Orthopaedic Surgery and Research.2024;[Epub]     CrossRef
  • Tofacitinib treatment for plaque psoriasis and psoriatic arthritis: A meta-analysis of randomised controlled trials
    Tao Wang, Wei Wu, Xiaoqing Zhang, Bin Gan, Yanfang Zhou, Xiaoyan Cheng
    Indian Journal of Dermatology, Venereology and Leprology.2024; 91: 172.     CrossRef
  • Text Network Analysis to Develop a Search Strategy for a Systematic Review
    Subeen Leem, Jieun Shin, Jong-Yeup Kim, Sung Ryul Shim
    Applied Sciences.2024; 14(19): 8909.     CrossRef
  • High-flow nasal cannula in adults with chronic respiratory diseases during physical exercise: a systematic review and meta-analysis
    Eduardo Moya-Gallardo, Jeniffer Fajardo-Gutiérrez, Karol Acevedo, Francisca Verdugo-Paiva, Rocío Bravo-Jeria, Luis Ortiz-Muñoz, Felipe Contreras-Briceño, Maximiliano Espinosa-Ramírez
    BMJ Open Respiratory Research.2024; 11(1): e002431.     CrossRef
  • Effects of rivastigmine on gait in patients with neurodegenerative disorders: A systematic review and meta-analysis
    Sung Ryul Shim, Jong-Yeup Kim, Kyum-Yil Kwon, Jieun Shin, Yungjin Lee, Seon-Min Lee, Ghulam Md Ashraf
    PLOS ONE.2024; 19(12): e0310900.     CrossRef
  • A Systematic Review and Meta-Analysis of Randomized Controlled Trials for Intimate Partner Violence: The Effects of the Programs Based on Their Purposes
    Sihyun Park, Sin-Hyang Kim
    Trauma, Violence, & Abuse.2023; 24(4): 2115.     CrossRef
  • Association between age and efficacy of combination systemic therapies in patients with metastatic hormone-sensitive prostate cancer: a systematic review and meta-analysis
    Pawel Rajwa, Takafumi Yanagisawa, Isabel Heidegger, Fabio Zattoni, Giancarlo Marra, Timo F. W. Soeterik, Roderick C. N. van den Bergh, Massimo Valerio, Francesco Ceci, Claudia V. Kesch, Veeru Kasivisvanathan, Ekaterina Laukhtina, Tatsushi Kawada, Peter Ny
    Prostate Cancer and Prostatic Diseases.2023; 26(1): 170.     CrossRef
  • The Effect of Testosterone Replacement on Sexual Function in the Elderly: A Systematic Review and Meta-Analysis
    Hee Jo Yang, Ki Hong Kim, Doo Sang Kim, Chang Ho Lee, Youn Soo Jeon, Sung Ryul Shim, Jae Heon Kim
    The World Journal of Men's Health.2023; 41(4): 861.     CrossRef
  • Effects of Sexual Rehabilitation on Sexual Dysfunction in Patients with Cardiovascular Disease: A Systematic Review and Meta-Analysis
    Jae Joon Park, Seung Whan Doo, Allison Kwon, Do Kyung Kim, Won Jae Yang, Yun Seob Song, Sung Ryul Shim, Jae Heon Kim
    The World Journal of Men's Health.2023; 41(2): 330.     CrossRef
  • Diagnostic, clustering, and immune cell infiltration analysis of m6A regulators in patients with sepsis
    Fenghui Li, Yuan Zhang, Zhiyun Peng, Yingjing Wang, Zhaoshang Zeng, Zhongxiang Tang
    Scientific Reports.2023;[Epub]     CrossRef
  • Effects of robot-assisted minimally invasive surgery on osteoporotic vertebral compression fracture: a systematic review, meta-analysis, and meta-regression of retrospective study
    Haoqian Chen, Jia Li, Xin Wang, Yanming Fu
    Archives of Osteoporosis.2023;[Epub]     CrossRef
  • The status of phosphorus levels in Iranian agricultural soils — a systematic review and meta-analysis
    Mohsen Jalali, Wolfram Buss, Fatemeh Parviznia, Mahdi Jalali
    Environmental Monitoring and Assessment.2023;[Epub]     CrossRef
  • Combination of Chinese herbal medicine and conventional western medicine for coronavirus disease 2019: a systematic review and meta-analysis
    Lei Tong, Zhenyu Ma, Yixiao Zhou, Shuping Yang, Yalin Yang, Jingran Luo, Junbo Huang, Fucai Wang
    Frontiers in Medicine.2023;[Epub]     CrossRef
  • Deviation of behavioural and productive parameters in dairy cows due to a lameness event: a synthesis of reviews
    Luisa Magrin, Barbara Contiero, Giulio Cozzi, Flaviana Gottardo, Severino Segato
    Italian Journal of Animal Science.2023; 22(1): 739.     CrossRef
  • Effectiveness of family interventions for patients with schizophrenia: A systematic review and meta‐analysis
    Sin‐Hyang Kim, Sihyun Park
    International Journal of Mental Health Nursing.2023; 32(6): 1598.     CrossRef
  • Alcohol-Containing Versus Aqueous-Based Solutions for Skin Preparation in Abdominal Surgery: A Systematic Review and Meta-analysis
    Dimitra V. Peristeri, Hussameldin M. Nour, Amiya Ahsan, Sameh Abogabal, Krishna K. Singh, Muhammad Shafique Sajid
    Journal of Surgical Research.2023; 291: 734.     CrossRef
  • Robot-assisted laparoscopic repair in hiatal hernia with kyphosis: A case report with meta-analysis
    Qi Liu, Dianchen Wang, Zhao Sun, Jianwu Jiang, Yang Fu
    International Journal of Abdominal Wall and Hernia Surgery.2023; 6(2): 92.     CrossRef
  • Medical Application of Big Data: Between Systematic Review and Randomized Controlled Trials
    Sung Ryul Shim, Joon-Ho Lee, Jae Heon Kim
    Applied Sciences.2023; 13(16): 9260.     CrossRef
  • Oral Nutritional Supplements Reduce Body Weight Loss after Gastrectomy in Patients with Gastric Cancer: A Systematic Review and Meta-Analysis of Randomized Controlled Trials
    Mijoo Choi, Jong-Yeup Kim, Hyun-Hi Kang, Eunju Park, Sung Ryul Shim
    Nutrients.2023; 15(18): 3924.     CrossRef
  • Systematic review and meta-analysis: a critical examination of the methodology
    S. Yu. Martsevich S.Yu., A. R. Navasardyan, K. V. Lobastov, M. V. Mikaelyan, E. V. Mikhaylenko, A. Yu. Suvorov, I. V. Schastlivtsev, O. N. Dzhioeva, V. V. Matveev, E. S. Akimova, V. V. Sytkov, E. Dubar, O. M. Drapkina
    Rational Pharmacotherapy in Cardiology.2023; 19(4): 382.     CrossRef
  • Effects of Thrombin-Based Hemostatic Agent in Total Knee Arthroplasty: Meta-Analysis
    Jung-Wee Park, Tae Woo Kim, Chong Bum Chang, Minji Han, Jong Jin Go, Byung Kyu Park, Woo-Lam Jo, Young-Kyun Lee
    Journal of Clinical Medicine.2023; 12(20): 6656.     CrossRef
  • The Effects of Auricular Therapy in Patients with Type 2 Diabetes: A Systematic Review and Meta-Analysis
    Hyejin Lee, Bomi Kim, Hyojung Park
    Journal of Korean Academy of Fundamentals of Nursing.2023; 30(4): 415.     CrossRef
  • Unveiling the Therapeutic Potential and Healthcare Applications of Marine Therapy: A Systematic Review with Meta-Analysis and Meta-Regression
    Sung Ryul Shim, Dayeon Shin, Seong-Jang Kim, Young Kook Kim, Kyung Ju Lee
    Marine Drugs.2023; 21(12): 604.     CrossRef
  • How to perform meta-analysis in R: a simple yet comprehensive guide
    Muhammad Aaqib Shamim, Aravind P Gandhi, Pradeep Dwivedi, Bijaya Kumar Padhi
    The Evidence.2023; 1(1): 93.     CrossRef
  • Molecular subtyping of ependymoma and prognostic impact of Ki-67
    Ka Young Lim, Kwanghoon Lee, Yumi Shim, Jin Woo Park, Hyunhee Kim, Jeongwan Kang, Jae Kyung Won, Seung-Ki Kim, Ji Hoon Phi, Chul-Kee Park, Chun-Kee Chung, Hongseok Yun, Sung-Hye Park
    Brain Tumor Pathology.2022; 39(1): 1.     CrossRef
  • Heavy metal profile of surface and ground water samples from the Niger Delta region of Nigeria: a systematic review and meta-analysis
    Francis Uchenna Umeoguaju, Joyce Oronne Akaninwor, Eka Bassey Essien, Benjamin A. Amadi
    Environmental Monitoring and Assessment.2022;[Epub]     CrossRef
  • Effects of cognitive rehabilitation in Parkinson disease: a meta-analysis
    Andreina Giustiniani, Lorenza Maistrello, Laura Danesin, Elena Rigon, Francesca Burgio
    Neurological Sciences.2022; 43(4): 2323.     CrossRef
  • Effect of Auriculotherapy on Musculoskeletal Pain: A Systematic Review and Meta-Analysis
    Sun Yeob Choi, Yeo Ju Kim, Bomi Kim
    Journal of Korean Academy of Nursing.2022; 52(1): 4.     CrossRef
  • Comparative Efficacy and Safety of 11 Drugs as Therapies for Adults With Neuropathic Pain After Spinal Cord Injury: A Bayesian Network Analysis Based on 20 Randomized Controlled Trials
    Hai-Qian Ling, Zi-Hao Chen, Lei He, Feng Feng, Chuang-Gui Weng, Si-Jin Cheng, Li-Min Rong, Pei-Gen Xie
    Frontiers in Neurology.2022;[Epub]     CrossRef
  • Effects of low-intensity pulsed ultrasound on knee osteoarthritis: A systematic review and meta-analysis of randomized controlled trials
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    Clinical Rehabilitation.2022; 36(9): 1153.     CrossRef
  • Risk of Adverse Events in Cancer Patients Receiving Nivolumab With Ipilimumab: A Meta-Analysis
    Xin Zhao, Fengwei Gao, Jie Yang, Hua Fan, Qingyun Xie, Kangyi Jiang, Jie Gong, Benjian Gao, Qian Yang, Zehua Lei
    Frontiers in Oncology.2022;[Epub]     CrossRef
  • Using the forest plot to compare citation achievements in bibliographic and meta-analysis studies since 2011 using data on PubMed Central: A retrospective study
    Jian-Wei Wu, Tsair-Wei Chien, Ya-Ching Tsai, Hsien-Yi Wang, Wei-Chih Kan, Lin-Yen Wang
    Medicine.2022; 101(27): e29213.     CrossRef
  • Acupotomy for Carpal Tunnel Syndrome: A Systematic Review and Meta-Analysis
    Jae-Min Jeong, Jae-Uk Sul, Seon-Jong Kim, Yun-Gwon Seon, Ji-Min Choi, Hui-Jeong Noh, Jin-Bong Choi
    Journal of Korean Medicine Rehabilitation.2022; 32(3): 55.     CrossRef
  • Efficacy and Safety of Ketamine vs Electroconvulsive Therapy Among Patients With Major Depressive Episode
    Taeho Greg Rhee, Sung Ryul Shim, Brent P. Forester, Andrew A. Nierenberg, Roger S. McIntyre, George I. Papakostas, John H. Krystal, Gerard Sanacora, Samuel T. Wilkinson
    JAMA Psychiatry.2022; 79(12): 1162.     CrossRef
  • Research features between Urology and Nephrology authors in articles regarding UTI related to CKD, HD, PD, and renal transplantation
    Keng-Kok Tan, Tsair-Wei Chien, Wei-Chih Kan, Chen-Yu Wang, Willy Chou, Hsien-Yi Wang
    Medicine.2022; 101(41): e31052.     CrossRef
  • Perspectives on the Psychological and Physiological Effects of Forest Therapy: A Systematic Review with a Meta-Analysis and Meta-Regression
    Sung Ryul Shim, JinKyung Chang, JooHee Lee, WooJin Byeon, Jeongwon Lee, Kyung Ju Lee
    Forests.2022; 13(12): 2029.     CrossRef
  • Association of Statin Use with the Risk of Incident Prostate Cancer: A Meta-Analysis and Systematic Review
    Meng-Yao Xu, Ye An, Chen-Qian Liu, Jin-Zhou Xu, Xing-Yu Zhong, Na Zeng, Jian-Xuan Sun, Qi-Dong Xia, Shao-Gang Wang, Ruhai Bai
    Journal of Oncology.2022; 2022: 1.     CrossRef
  • Possible Association between Differences in Nasalance Scores and Early Spread of COVID-19 Based on Linguistic Analysis
    Konghee Lee, Sung Ryul Shim, Jae Heon Kim
    Soonchunhyang Medical Science.2022; 28(2): 96.     CrossRef
  • A novel microRNA-based signature predicts prognosis among nasopharyngeal cancer patients
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Diagnostic test accuracy: application and practice using R software
Sung Ryul Shim, Seong-Jang Kim, Jonghoo Lee
Epidemiol Health. 2019;41:e2019007.   Published online March 28, 2019
DOI: https://doi.org/10.4178/epih.e2019007
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AbstractAbstract AbstractSummary PDFSupplementary Material
Abstract
The objective of this paper is to describe general approaches of diagnostic test accuracy (DTA) that are available for the quantitative synthesis of data using R software. We conduct a DTA that summarizes statistics for univariate analysis and bivariate analysis. The package commands of R software were “metaprop” and “metabin” for sensitivity, specificity, and diagnostic odds ratio; forest for forest plot; reitsma of “mada” for a summarized receiver-operating characteristic (ROC) curve; and “metareg” for meta-regression analysis. The estimated total effect sizes, test for heterogeneity and moderator effect, and a summarized ROC curve are reported using R software. In particular, we focus on how to calculate the effect sizes of target studies in DTA. This study focuses on the practical methods of DTA rather than theoretical concepts for researchers whose fields of study were non-statistics related. By performing this study, we hope that many researchers will use R software to determine the DTA more easily, and that there will be greater interest in related research.
Summary
Korean summary
통계프로그램으로서의 R이 대세인 연구환경에서 R을 활용한 체계적인 메타분석 안내서가 요구되어지며 본 연구는 이에 대한 좋은 해답이 될 것이다. 더욱이 본 연구는 진단검사 메타분석 (Diagnostic test accuracy)의 이론과 더불어 R을 활용한 실습위주의 내용으로 구성되어져 있어 누구나 쉽게 실행할 수 있을 것이다. 본 연구를 통하여 많은 연구자들이 보다 쉽게 본인의 연구분야에 적용하여 관련 연구가 활성화되기를 바란다.

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